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GWAS on the Research Analysis Platform using regenie
An introduction to running GWAS using Regenie on the Research Analysis Platform. We will demonstrate how to run the analysis using a diabetes phenotype on the 300k data.

Topics include:

-Genomic file preprocessing and filtering using the Swiss Army Knife App
-Building phenotype/covariate files for cohorts using Spark JupyterLab
-Running regenie using the Swiss Army Knife App

Prior to the session, it is helpful to have an understanding of how to use the Research Analysis Platform. You can find our previous sessions covering it below:

-Research Analysis Platform Overview: https://www.youtube.com/watch?v=7uoiv2N5YPc
-Introduction to Jupyter Notebooks: https://www.youtube.com/watch?v=Ib4kl1VBbVY
-Exploring and Analyzing Jupyter Notebooks: https://www.youtube.com/watch?v=NX1Czn0_fr8

Nov 2, 2021 08:00 AM in Pacific Time (US and Canada)

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